rs30749947 SNP Detail

Summary

• ID
  rs30749947
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44057500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGG TGTCTTCAAT TCTGTACAGA
  R
  CGAACTTGGC ACTAAACTGC CCCGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss44958862	mCV24575356	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss146433140	ENSMUSSNP6534584	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss325817159	CHEV_19_44143551	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30749947					SNP	A	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44057500 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10883	CpG island 10883	within coordinates
Erlin1	ER lipid raft associated 1	within coordinates
Gm59010	predicted gene, 59010	799 bp upstream
Rr548150	regulatory region 548150	455 bp proximal
Rr548151	regulatory region 548151	810 bp proximal
Rr548152	regulatory region 548152	1416 bp proximal
Tssr159429	transcription start site region 159429	299 bp downstream
Tssr159430	transcription start site region 159430	585 bp downstream
Tssr159431	transcription start site region 159431	629 bp downstream
Tssr159432	transcription start site region 159432	675 bp downstream