rs30754006 SNP Detail

Summary

• ID
  rs30754006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:80191129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTGCAAA TATTGGAAAC
  ATTGCTCATA CTCTTTAGTA ATCAATAGGC AAATAGAATT TTGTTGTCAT CAGTCTTGAA
  CAATCTCTTG ATGTCTGTTG TGTCATGTTT CTTAGAGCAC TGACAAATTT GTCACTTCTG
  TTGTAACTGA GATATGAAAT CATCTCCTTT GATTACTTTT CAGGTTCTTC CATGATATGT
  R
  TGGGTTAAGC ATCCGTAGAA ATGCACACAC ATTAATTACT GTAGGTATGG CATGAGTTCT
  CCCCATTGAG CTATTCCTCA TTGATCTCAT AGTCACAGAG GTGTAAATGG TACAATGTCT
  ATGTTGGGAG CTCAGAGAAA GCTGGAATGA ACATCTAAGA CCTCTATGAA TTAGGACTGA
  ACACTTGCCA TCTCTGATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45461861	mCV22788383	ABI	CRAMUS_MOUSE	f	SNP		A	G					G
ss47038245	NES10753743	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	A	G	G	G	G	G
ss135380130	ENSMUSSNP4305780	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30754006					SNP	A	A	G	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47038245	NES10753743	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80191129 () rs orientation: forward

Symbol	Name	Function Class
Gm37971	predicted gene, 37971	1301 bp downstream