rs30754458 SNP Detail

Summary

• ID
  rs30754458
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90825149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTCCCTA GAGCTGAGTC
  AGCAGTCCCA ACTTCCTGTC ACTTTGGGAA TCTTGGGTAG AAATGAGCTG CTAATCTTTG
  GGAGGGTACA AATAAATGTG GGGTGATGCC TCAGAAGGGG TGCCATCCAG GCCCTGGACC
  AGACACATTC TGCCTCTTCA TACCACACAA GAAGGAGTAT CAGCCTATTT AATTCACAAA
  W
  CATCTTTGCA GGGAGTAAGT TTCCATGGCA ACATCAGTGA GGCTGACAGG GACTGAGGCA
  ACTTGCAGCA TCTTCCTGTG TCAGCCCCTC AGGTGCTGTG TAGCCAATGC CCTTGCCAGG
  CCCATCTCTG CCTGGCTTTG CTGAAAGGAC TGGGCTGCAT ACAGCCAGTT ATATAAGTGG
  TTGCCTTAGA AGAACTGCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45960333	mCV22638296	ABI	CRAMUS_MOUSE	f	SNP		A	T					A		A
ss60908338	NES15947366	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	A	T	A		A	A	A	A	A	A	A	A	A
ss133379892	ENSMUSSNP1837101	ENSEMBL	ENSEMBL_Sanger	f	SNP			T							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30754458					SNP	A	A	T	A	A	T	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60908338	NES15947366	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90825149 () rs orientation: forward

Symbol	Name	Function Class
D6Mit229	DNA segment, Chr 6, Massachusetts Institute of Technology 229	1591 bp distal
Iqsec1	IQ motif and Sec7 domain 1	Intron