rs30754512 SNP Detail

Summary

• ID
  rs30754512
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:137548186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACG GAAAAATAAA TGCAAGTGTA
  R
  TAAAAATAAA TGCAAGGCAG CTGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45961604	mCV24060114	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		A
ss48108426	NES11849837	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	A	A		A	A	A	G	G	A	A	G	A
ss133873245	ENSMUSSNP4831775	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30754512					SNP	A	A	A	A	G	A	A	G	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48108426	NES11849837	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:137548186 () rs orientation: forward

Symbol	Name	Function Class
Eps8	epidermal growth factor receptor pathway substrate 8	within coordinates
Rr640223	regulatory region 640223	1313 bp distal
Rr640224	regulatory region 640224	182 bp distal
Rr640225	regulatory region 640225	within coordinates
Rr640226	regulatory region 640226	137 bp proximal
Tssr63894	transcription start site region 63894	428 bp upstream
Tssr63895	transcription start site region 63895	380 bp upstream
Tssr63896	transcription start site region 63896	357 bp upstream
Tssr63897	transcription start site region 63897	156 bp upstream
Tssr63898	transcription start site region 63898	134 bp upstream