rs30754885 SNP Detail

Summary

• ID
  rs30754885
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115509761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTA CCTGAATGAC TCAAGAGAGA
  Y
  AGAAGAAACA AACAACAGAC CCCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45461870	mCV24998863	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss135664487	ENSMUSSNP4035643	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss320892955	CHEV_3_115419030	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30754885					SNP	T	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115509761 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13725	CpG island 13725	564 bp distal
Gm9889	predicted gene 9889	within coordinates
Rr397956	regulatory region 397956	within coordinates
Rr583585	regulatory region 583585	1079 bp distal
Rr583586	regulatory region 583586	550 bp distal
Rr583587	regulatory region 583587	451 bp proximal
S1pr1	sphingosine-1-phosphate receptor 1	1057 bp upstream
Tssr31332	transcription start site region 31332	940 bp downstream
Tssr35278	transcription start site region 35278	1315 bp upstream
Tssr35279	transcription start site region 35279	1299 bp upstream
Tssr35280	transcription start site region 35280	1249 bp upstream
Tssr35281	transcription start site region 35281	1193 bp upstream
Tssr35282	transcription start site region 35282	1165 bp upstream
Tssr35283	transcription start site region 35283	1050 bp upstream