rs30756433 SNP Detail

Summary

• ID
  rs30756433
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:86826487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCA CATCAGAATA TCTAAGGGGT
  R
  GGGCCGGGTC CGATATTTTA AAAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45462738	mCV24905872	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss135451249	ENSMUSSNP3093048	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss320830112	CHEV_3_86723102	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30756433					SNP	G	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86826487 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13328	CpG island 13328	343 bp proximal
Dclk2	doublecortin-like kinase 2	within coordinates
Rr77821	regulatory region 77821	within coordinates
Rr375296	regulatory region 375296	1855 bp downstream
Tssr33913	transcription start site region 33913	1153 bp downstream
Tssr33914	transcription start site region 33914	1183 bp downstream
Tssr33915	transcription start site region 33915	1215 bp downstream
Tssr33916	transcription start site region 33916	1308 bp downstream
Tssr33917	transcription start site region 33917	1363 bp downstream
Tssr33918	transcription start site region 33918	1650 bp downstream