rs30756810 SNP Detail

Summary

• ID
  rs30756810
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:103876758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCT TATCTGCATG GCTCAGATTG
  Y
  TACTATCGTC TGATTGAGCT GCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45462330	mCV25363869	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss135565687	ENSMUSSNP1282187	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss320859275	CHEV_3_103773365	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30756810					SNP	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103876758 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Phtf1	putative homeodomain transcription factor 1			Intron
				Noncoding-Transcript-Variant
Phtf1os	putative homeodomain transcription factor 1, opposite strand			1126 bp upstream
Rr582453	regulatory region 582453			986 bp distal
Rr582454	regulatory region 582454			809 bp distal
Rr582455	regulatory region 582455			308 bp distal
Rr582456	regulatory region 582456			698 bp distal
Rr582457	regulatory region 582457			621 bp distal
Tssr31039	transcription start site region 31039			1470 bp downstream
Tssr31040	transcription start site region 31040			1048 bp downstream
Tssr31041	transcription start site region 31041			781 bp downstream
Tssr34872	transcription start site region 34872			1121 bp upstream