rs30756936 SNP Detail

Summary

• ID
  rs30756936
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144995821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCC TCAAATAAGC TTTCCTTTCT
  R
  CCCTCACTTA TAGTTATGGG AGTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45962024	mCV23990596	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss133960868	ENSMUSSNP2863014	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30756936					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144995821 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	882 bp distal
Gm15687	predicted gene 15687	within coordinates
Gm26666	predicted gene, 26666	within coordinates
Tssr2055	transcription start site region 2055	1016 bp upstream
Tssr59519	transcription start site region 59519	1547 bp downstream
Tssr64036	transcription start site region 64036	1503 bp upstream
Tssr64037	transcription start site region 64037	1453 bp upstream
Tssr64038	transcription start site region 64038	1425 bp upstream
Tssr64039	transcription start site region 64039	1408 bp upstream
Tssr64040	transcription start site region 64040	1389 bp upstream
Tssr64041	transcription start site region 64041	1366 bp upstream
Tssr64042	transcription start site region 64042	1348 bp upstream
Tssr64043	transcription start site region 64043	1290 bp upstream
Tssr64044	transcription start site region 64044	1274 bp upstream
Tssr64045	transcription start site region 64045	1242 bp upstream