rs30757313 SNP Detail

Summary

• ID
  rs30757313
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94903003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGG CCTTAGTGCA CAGGCTCTCA
  Y
  CACTGGATTG GGACCATCAG GAAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46440819	mCV22694208	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss132651949	ENSMUSSNP4304696	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss323817424	CHEV_11_94873491	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30757313					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94903003 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3571	CpG island 3571	1516 bp distal
Gm36385	predicted gene, 36385	1926 bp upstream
Gm72634	predicted gene, 72634	279 bp upstream
Rr250	regulatory region 250	145 bp proximal
Rr454925	regulatory region 454925	1937 bp distal
Rr454926	regulatory region 454926	1436 bp distal
Rr454927	regulatory region 454927	290 bp distal
Rr454928	regulatory region 454928	within coordinates
Samd14	sterile alpha motif domain containing 14	within coordinates
Tssr104336	transcription start site region 104336	1992 bp downstream
Tssr104337	transcription start site region 104337	1901 bp downstream
Tssr104338	transcription start site region 104338	1884 bp downstream
Tssr104339	transcription start site region 104339	1812 bp downstream
Tssr104340	transcription start site region 104340	1798 bp downstream
Tssr104341	transcription start site region 104341	1758 bp downstream
Tssr104342	transcription start site region 104342	1694 bp downstream
Tssr110238	transcription start site region 110238	1852 bp upstream
Tssr110239	transcription start site region 110239	15 bp downstream