rs30757661 SNP Detail

Summary

• ID
  rs30757661
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123060538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGCTTTTA TTTCATAAAA CTTTCATAGA TTCCCCAAAC
  TCGCAGCTCG GCTGCGGACT GAACTCATAC TTTCTCTCTG ATAGTGAGAC ATTTTTGGAG
  W
  GTGGCCTATT GGTCCTGATT TTAGGGCCAA ATAGGTGTTT CTCAACTGTT TCTGTCCAAA
  GGTGAGCTAA AAGTTATCTA CCTTTGACAC AGGCCAGTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45462948	mCV25366988	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss135761719	ENSMUSSNP2725668	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss320918501	CHEV_3_122969807	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30757661					SNP	T	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123060538 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13776	CpG island 13776	56 bp proximal
Gm56815	predicted gene, 56815	within coordinates
Gm66521	predicted gene, 66521	within coordinates
Rr77168	regulatory region 77168	within coordinates
Sec24d	SEC24 homolog D, COPII coat complex component	566 bp upstream
Tssr31542	transcription start site region 31542	292 bp upstream
Tssr31543	transcription start site region 31543	319 bp upstream
Tssr31544	transcription start site region 31544	556 bp upstream