rs30758135 SNP Detail

Summary

• ID
  rs30758135
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:143906526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AACCAAACCT CATTTTACTC TGATACCACC GGAGGAGGCA AACACACCCA TACTCCCGCA
  CCAAACTGCA CCGGGATCTT GGGCAGCATT CACCAGCCAC AGATAAGGCC AACCACAACA
  GCAGGGTTAA ACTTTGAATA AAATATCCCA CCCACTGATT TAACAGCTTC AGGAAGATCA
  CTATACAGAC AAAGGTTCAG AACAGACACT TAAATAGAAG GAAAGTCTTC TTTTCTCTCT
  CTCTCTAGTG GTATTGGTGT GGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGGT
  K
  TTTTTTTTTT TTTAATTACT GGATGTTGAA ACAGAACACC TCCTAGAAGC ATTCAAGTGC
  GACAGTCTAT CAAACCATTT ACTCAAATTA AATGTGTAAT CCTTCAAATG CCTCCTTTCA
  AATTAATGAG TTTAAGTAGC TTGAGTTCAC CTGAAAAGAT CCTATAGGCA CCTGACCTCC
  TGAATTCTTT CCATTAGCTG CCCTGAAGCC TGTTGGGAAA GACTGCTTAC AACGACATAT
  GACTGTTCCT ATACATTACT TTAAAATGCT AGATTAGCAT AATCCTATCC TCTCTTTTGG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45462640	mCV23166719	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30758135					SNP	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143906526 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13893	CpG island 13893	1752 bp distal
Cpgi13894	CpG island 13894	1046 bp proximal
Gm43445	predicted gene 43445	1503 bp upstream
Lmo4	LIM domain only 4	Intron
Rr375847	regulatory region 375847	92 bp downstream
Rr586595	regulatory region 586595	1514 bp distal
Rr586597	regulatory region 586597	1013 bp distal
Rr586598	regulatory region 586598	152 bp distal
Rr586599	regulatory region 586599	1220 bp proximal
Rr586600	regulatory region 586600	1557 bp proximal
Tssr35961	transcription start site region 35961	1375 bp upstream
Tssr35962	transcription start site region 35962	162 bp downstream
Tssr35963	transcription start site region 35963	1150 bp downstream
Tssr35964	transcription start site region 35964	1197 bp downstream
Tssr35965	transcription start site region 35965	1535 bp downstream
Tssr35966	transcription start site region 35966	1585 bp downstream
Tssr35967	transcription start site region 35967	1814 bp downstream