rs30758139 SNP Detail

Summary

• ID
  rs30758139
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87754421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCA ACCATGCCCC CAAGGTACGT
  R
  TAAAGTTTTC TCTCTGCTCC CTTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45462644	mCV23485235	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	A
ss135468477	ENSMUSSNP1277712	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30758139					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87754421 () rs orientation: forward

Symbol	Name	Function Class
Rr367451	regulatory region 367451	within coordinates
Rr579559	regulatory region 579559	99 bp distal
Sh2d2a	SH2 domain containing 2A	within coordinates
Tssr29832	transcription start site region 29832	1815 bp downstream
Tssr29833	transcription start site region 29833	342 bp downstream
Tssr29834	transcription start site region 29834	326 bp downstream
Tssr29835	transcription start site region 29835	260 bp downstream
Tssr29836	transcription start site region 29836	221 bp downstream
Tssr29837	transcription start site region 29837	115 bp downstream
Tssr29838	transcription start site region 29838	47 bp downstream
Tssr29839	transcription start site region 29839	22 bp upstream
Tssr33958	transcription start site region 33958	513 bp upstream
Tssr33959	transcription start site region 33959	313 bp upstream
Tssr33960	transcription start site region 33960	209 bp upstream
Tssr33961	transcription start site region 33961	1991 bp downstream