rs30759247 SNP Detail

Summary

• ID
  rs30759247
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:135286887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCC AGGTGATACT TCTTGCGGAA
  R
  GCTGCAGTTT TGAACTTCCC ACGAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss45961653	mCV24021873	ABI	CRAMUS_MOUSE	f	SNP	A			G		A
ss51444383	NES14008581	PERLEGEN	MM_PANEL2	f	SNP	A	A	A		G			A	A
ss133802853	ENSMUSSNP3611017	ENSEMBL	ENSEMBL_Sanger	f	SNP	A					A
ss321986321	CHEV_6_135259907	CHEVERUD	SCREENING_POP	f	SNP							A			G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30759247					SNP	A	A	A	G	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51444383	NES14008581	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:135286887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18093	CpG island 18093	42 bp proximal
Gm36640	predicted gene, 36640	within coordinates
Gm44274	predicted gene, 44274	1567 bp downstream
Pbp2	phosphatidylethanolamine binding protein 2	within coordinates
Tssr63760	transcription start site region 63760	460 bp downstream
Tssr63761	transcription start site region 63761	485 bp downstream