rs30760185 SNP Detail

Summary

• ID
  rs30760185
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:25188346 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ATCGG GCAAGGACCA ACCCCAATCA
  Y
  CAAGGGCCTG CAAGCTTCCC AGTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46440643	mCV23025032	ABI	CRAMUS_MOUSE	f	SNP		C	T				C
ss51082772	NES13879821	PERLEGEN	MM_PANEL2	r	SNP	G		A	A	G	G		A	G	A	A		G	A	G
ss148110792	ENSMUSSNP568364	ENSEMBL	ENSEMBL_Sanger	r	SNP		G	A									A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30760185					SNP	C	C	T	T	C	C	C	T	C	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51082772	NES13879821	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:25188346 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6			within coordinates
Prkag2	protein kinase, AMP-activated, gamma 2 non-catalytic subunit			Intron
				Noncoding-Transcript-Variant
Rr608456	regulatory region 608456			384 bp distal
Rr608457	regulatory region 608457			94 bp proximal
Rr608458	regulatory region 608458			248 bp proximal
Rr608459	regulatory region 608459			385 bp proximal
Rr608460	regulatory region 608460			1970 bp proximal