rs30761118 SNP Detail

Summary

• ID
  rs30761118
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58411271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGATCACT AATTGAGAAA
  ATGCCTTATA GCTGGATCTC ATAAAGGTAT TTCCTCAGCT GAAGCTCCTT CCTCTCTGAC
  TTTGTGTCTG GTTGACTCAT AAAGCCAGCC AGTATACTGG TTTATCCTGA AATTCTTTTC
  TGTCTTTCCC TGAGAATAGC TCCAAAGAAT GGCTGCTCCT CAGAATATTC TCAGCTGTGT
  S
  TCCTTTCTGC TGCTGCTGTT TCCAGATGTA ACTAACAGAT GGCTCTGTAA GATTAGTATT
  TGCAGAAACT GAACACAGGG TGGCAATGTG TCATTATTAA AAATATTAAT GTAGTTATTC
  ACTTTCTGAG AAACAGCATA AGTGGAAATT TACACACACA AGAGATTATC TTTTTATTTT
  ATTTGTTTGG TTTGAGACAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46980979	NES10793159	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G	G	G			G	G	G		C
ss135206861	ENSMUSSNP5604754	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					G			G
ss320783060	CHEV_3_58307772	CHEVERUD	SCREENING_POP	f	SNP									G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30761118					SNP	C	C	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46980979	NES10793159	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58411271 () rs orientation: forward

Symbol	Name	Function Class
Gm66340	predicted gene, 66340	501 bp upstream
Rr375034	regulatory region 375034	179 bp upstream
Rr577237	regulatory region 577237	1623 bp distal
Rr577238	regulatory region 577238	69 bp proximal
Tssr29204	transcription start site region 29204	1665 bp downstream