rs30761120 SNP Detail

Summary

• ID
  rs30761120
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58411404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAACAGATGG CTCTGTAAGA TTAGTATTTG CAGAAACTGA
  ACACAGGGTG GCAATGTGTC ATTATTAAAA ATATTAATGT AGTTATTCAC TTTCTGAGAA
  R
  CAGCATAAGT GGAAATTTAC ACACACAAGA GATTATCTTT TTATTTTATT TGTTTGGTTT
  GAGACAAGGT CTCACTGTGT GGCTCTGGAG GGACTGGAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46980981	NES10793160	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G			G	G		A
ss135206866	ENSMUSSNP383194	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G			G
ss320783061	CHEV_3_58307905	CHEVERUD	SCREENING_POP	f	SNP										G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30761120					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46980981	NES10793160	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58411404 () rs orientation: forward

Symbol	Name	Function Class
Gm66340	predicted gene, 66340	634 bp upstream
Rr375034	regulatory region 375034	46 bp upstream
Rr577237	regulatory region 577237	1756 bp distal
Rr577238	regulatory region 577238	43 bp distal
Tssr29204	transcription start site region 29204	1798 bp downstream