rs30761202 SNP Detail

Summary

• ID
  rs30761202
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97806062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTCCCACT TTTTCTCATG TTATTTTTGG CACTGCTGGT
  GTTGGAAGCT GGGGAAGTGA TTCACTGCAA AGTGAATTAA TTTTCCACGT TTTCTGATAC
  R
  TTCCCCAGTC GCCCCCTGGT TCCTCTCCCC CCGCCCCCCC CCCCCAGAGA TGACTCTGCA
  CTTACACTGC TGTCATCTTT GCTGGCTCAG ACAGAAATG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45962135	mCV23115540	ABI	CRAMUS_MOUSE	f	SNP		G						A
ss51375325	NES13725671	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	A	G	G	G	G	G	G
ss133421916	ENSMUSSNP3827632	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30761202					SNP	G	G	G	G	G	G	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51375325	NES13725671	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97806062 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Rr635225	regulatory region 635225	within coordinates
Tssr1945	transcription start site region 1945	1785 bp downstream
Tssr57867	transcription start site region 57867	1859 bp downstream
Tssr57868	transcription start site region 57868	1837 bp downstream
Tssr57869	transcription start site region 57869	1799 bp downstream
Tssr57870	transcription start site region 57870	1640 bp downstream
Tssr57871	transcription start site region 57871	1622 bp downstream
Tssr57872	transcription start site region 57872	852 bp downstream
Tssr57873	transcription start site region 57873	806 bp downstream
Tssr57874	transcription start site region 57874	789 bp downstream
Tssr57875	transcription start site region 57875	769 bp downstream
Tssr57876	transcription start site region 57876	739 bp downstream
Tssr57877	transcription start site region 57877	159 bp upstream
Tssr57878	transcription start site region 57878	203 bp upstream
Tssr57879	transcription start site region 57879	219 bp upstream
Tssr57880	transcription start site region 57880	272 bp upstream
Tssr57881	transcription start site region 57881	472 bp upstream
Tssr57882	transcription start site region 57882	570 bp upstream
Tssr57883	transcription start site region 57883	1846 bp upstream