rs30762280 SNP Detail

Summary

• ID
  rs30762280
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52182764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCAGGA CTCTTGCGGC
  TCTCATGGTC TTGGGCCCCC TCTTTGGGTC CTGAAAGCTG CGAGGTGGAT TGCGTCCGAG
  CTGTATGAGG CTGAGAGTGG AAATCGGGAG CTGGGAGCCT GCGGGAGCCT AGTCGCTCCC
  AAGCTGTAAA CCCAGGTTGG CTTGCCTCGG CTGAGGCTGC TACTCTCCCA CTGACGGTTA
  Y
  GCGCCGATAG AGAGATTTGG TTCTGTCGGG GAAGGGGGGT GTTCCTCTTT GTTCCTCAGG
  CTTCTTGATT AGGGGCATCC TGAGAGGCCG GGACAGGGCT GGGGCCCAGC TCGTAGACCC
  TTTCTTTTCA GTAGCCAGAG CCGATTTGGC GATGCCCTTT AGAATTTGAT GGCGAGGGAC
  CAAGGCGGAA AAGCCCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45962435	mCV22669670	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss133191038	ENSMUSSNP2634281	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30762280					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52182764 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17423	CpG island 17423	912 bp distal
Cpgi17424	CpG island 17424	within coordinates
Gm28308	predicted gene 28308	within coordinates
Hoxa3	homeobox A3	within coordinates
Hoxa5	homeobox A5	1327 bp upstream
Hoxa6	homeobox A6	504 bp downstream
Hoxaas3	Hoxa cluster antisense RNA 3	within coordinates
Rr630365	regulatory region 630365	1226 bp distal
Rr630366	regulatory region 630366	707 bp distal
Rr630367	regulatory region 630367	1109 bp distal
Tssr60991	transcription start site region 60991	1534 bp upstream
Tssr60992	transcription start site region 60992	1522 bp upstream
Tssr60993	transcription start site region 60993	1446 bp upstream
Tssr60994	transcription start site region 60994	1376 bp upstream
Tssr60995	transcription start site region 60995	1321 bp upstream