rs30762737 SNP Detail

Summary

• ID
  rs30762737
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48531588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAC TAACAGGAAC AAAATCCTCC
  M
  GCAGCACTGG CCGCGGGTTC CAGCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45962246	mCV23164407	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C
ss133164132	ENSMUSSNP1932595	ENSEMBL	ENSEMBL_Sanger	f	SNP				C
ss321793665	CHEV_6_48504653	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30762737					SNP	A	A	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48531588 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17370	CpG island 17370	within coordinates
Gm67220	predicted gene, 67220	within coordinates
Gm67227	predicted gene, 67227	within coordinates
Lrrc61	leucine rich repeat containing 61	144 bp upstream
Rr399635	regulatory region 399635	within coordinates
Rr629686	regulatory region 629686	1436 bp distal
Rr629687	regulatory region 629687	within coordinates
Rr629688	regulatory region 629688	109 bp proximal
Rr629689	regulatory region 629689	162 bp proximal
Tssr56137	transcription start site region 56137	122 bp upstream
Tssr56138	transcription start site region 56138	276 bp upstream
Tssr60734	transcription start site region 60734	3 bp downstream
Tssr60735	transcription start site region 60735	20 bp downstream
Tssr60736	transcription start site region 60736	63 bp downstream