rs30762821 SNP Detail

Summary

• ID
  rs30762821
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164269325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATTCATAG CGTGCACCAA CCGTTCGGCT CTGCACCGTG
  AAGAAAGAAA AGAACTTCTT GTTCCTTATC ATTTCCCACT GGAGACAGGG CTACGTGAGG
  Y
  CTGCGCTAGA CAAGGACTTC CCACAAGCTG TCTGCTCTCT TCAAAAGATA AAGACGTATT
  AGCAGAGGCA GTCACTGGTG CGTGACCCCA AAGCCAACC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44961971	mCV24721482	ABI	CRAMUS_MOUSE	f	SNP	C	C					C		T
ss60337227	NES15839823	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	T	C	C	T	C
ss145978696	ENSMUSSNP4732961	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30762821					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60337227	NES15839823	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164269325 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Rr13722	regulatory region 13722	1876 bp proximal
Rr20253	regulatory region 20253	1925 bp distal
Rr25449	regulatory region 25449	1811 bp proximal
Rr31656	regulatory region 31656	within coordinates
Tssr9785	transcription start site region 9785	1470 bp upstream
Tssr9786	transcription start site region 9786	1508 bp upstream
Tssr14743	transcription start site region 14743	180 bp upstream
Tssr14744	transcription start site region 14744	138 bp upstream