rs30763572 SNP Detail

Summary

• ID
  rs30763572
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050515 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  TCAGTTTTCT CGCCATATTC CAGGTCCTTC AGTGTGCATT TCTCATTTTT CACGTTTTTT
  AGTGATTGCG TCATTTTCAA GTCGTCAAGT GGATGTTTCT CATTTTCCAT GTTTTTTAGT
  TTTCTTGCCA TATTCCACGT CCTACAGTGG ACATTTCTAA ATTTTCCACC TTTTTCAGTT
  TTCCTCGCCA TATATCACGT CCTAAAGTGT GTATTTCTCA TTTTCCGTGA TTTTCAGTTT
  TCTCGCCATA TTCCAGGTCC CTCAGTGTGC ATTTCTCATT TTTCACGTTT TTTAGTGATT
  D
  CGTCATTTTT CAAGTCTTCA AGTGGATGTT TCTCATTTTC CATGATTTTC AGTTTTCTTG
  CCATATTTCA CGTCCTACAG TGGACATTTC TAAATATTCC ACCTTTTTCA GTTTTCCTCG
  CCATATTTCA CGTCCTAAAG TGTGTATTTC TCATTTTCCG TGATTTACCG TTTTCTCGCC
  ATATTCCAGG TCCTTCAGTG TGCATTTCTC ATTATTCATG TTTTTTAGTG ATTTCGTCAT
  TTTTCAAGTC GTCAAGTGGA TGTTTCTCAT TTTCCATGAT TCCCAGTTTT CTTGCCATAT
                                                                   
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss46441606	mCV22981109	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss46469349	mCV25365502	ABI	CRAMUS_MOUSE	r	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs30763572					SNP	G	T	?	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050515 () rs orientation: reverse

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1811 bp downstream
Tssr4285	transcription start site region 4285	1786 bp upstream
Tssr4286	transcription start site region 4286	1682 bp downstream
Tssr4287	transcription start site region 4287	1647 bp upstream
Tssr4288	transcription start site region 4288	1619 bp downstream
Tssr4289	transcription start site region 4289	1524 bp upstream
Tssr4290	transcription start site region 4290	1517 bp downstream
Tssr4291	transcription start site region 4291	1437 bp upstream
Tssr4292	transcription start site region 4292	1401 bp downstream
Tssr4293	transcription start site region 4293	1366 bp upstream
Tssr4294	transcription start site region 4294	1364 bp downstream
Tssr4295	transcription start site region 4295	1291 bp upstream
Tssr4296	transcription start site region 4296	1328 bp downstream
Tssr4297	transcription start site region 4297	1264 bp upstream
Tssr4298	transcription start site region 4298	1246 bp downstream
Tssr4299	transcription start site region 4299	1206 bp downstream
Tssr4300	transcription start site region 4300	1168 bp downstream
Tssr4301	transcription start site region 4301	1150 bp upstream
Tssr4302	transcription start site region 4302	1138 bp upstream
Tssr4303	transcription start site region 4303	1083 bp downstream
Tssr4304	transcription start site region 4304	1054 bp upstream
Tssr4305	transcription start site region 4305	985 bp downstream
Tssr4306	transcription start site region 4306	966 bp upstream
Tssr4307	transcription start site region 4307	945 bp downstream
Tssr4308	transcription start site region 4308	913 bp upstream
Tssr4309	transcription start site region 4309	869 bp upstream
Tssr4310	transcription start site region 4310	822 bp downstream
Tssr4311	transcription start site region 4311	794 bp upstream
Tssr4312	transcription start site region 4312	714 bp downstream
Tssr4313	transcription start site region 4313	655 bp upstream
Tssr4314	transcription start site region 4314	643 bp downstream
Tssr4315	transcription start site region 4315	619 bp downstream
Tssr4316	transcription start site region 4316	592 bp upstream
Tssr4317	transcription start site region 4317	516 bp downstream
Tssr4318	transcription start site region 4318	492 bp upstream
Tssr4319	transcription start site region 4319	435 bp upstream
Tssr4320	transcription start site region 4320	371 bp downstream
Tssr4321	transcription start site region 4321	343 bp upstream
Tssr4322	transcription start site region 4322	244 bp downstream
Tssr4323	transcription start site region 4323	209 bp upstream
Tssr4324	transcription start site region 4324	179 bp downstream
Tssr4325	transcription start site region 4325	128 bp downstream
Tssr4326	transcription start site region 4326	90 bp upstream
Tssr4327	transcription start site region 4327	87 bp downstream
Tssr4328	transcription start site region 4328	5 bp downstream
Tssr4329	transcription start site region 4329	7 bp upstream
Tssr4330	transcription start site region 4330	96 bp upstream
Tssr4331	transcription start site region 4331	120 bp downstream
Tssr4332	transcription start site region 4332	226 bp downstream
Tssr4333	transcription start site region 4333	238 bp upstream
Tssr4334	transcription start site region 4334	260 bp downstream
Tssr4335	transcription start site region 4335	407 bp downstream
Tssr4336	transcription start site region 4336	411 bp upstream
Tssr4337	transcription start site region 4337	484 bp downstream