rs30763639 SNP Detail

Summary

• ID
  rs30763639
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97803566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTCCCAGA AAGGTAGCAG AAGATAGGTT GTTGGCTCTT
  TAATCACTCT CAAGGGCATT ATGGGTAAGT TGTTGGTTTC CCCCATTACT TATCAAAGCT
  R
  TTCTTTGGGT CTTGCTTCCC GATGCCTTCA ACAGTCTTAT AGACACACCC CAGCATCTTG
  TTCACCACTA GACATGTACT CCCTAACATC TTGGTGTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45962658	mCV23115480	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		G
ss51375375	NES13725646	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		G	G	A	A	A	A	A	A	A
ss133421892	ENSMUSSNP4672617	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30763639					SNP	A	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51375375	NES13725646	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97803566 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Tssr1945	transcription start site region 1945	708 bp upstream
Tssr57866	transcription start site region 57866	331 bp upstream
Tssr57867	transcription start site region 57867	629 bp upstream
Tssr57868	transcription start site region 57868	648 bp upstream
Tssr57869	transcription start site region 57869	674 bp upstream
Tssr57870	transcription start site region 57870	840 bp upstream
Tssr57871	transcription start site region 57871	860 bp upstream
Tssr57872	transcription start site region 57872	1634 bp upstream
Tssr57873	transcription start site region 57873	1685 bp upstream
Tssr57874	transcription start site region 57874	1695 bp upstream
Tssr57875	transcription start site region 57875	1712 bp upstream
Tssr57876	transcription start site region 57876	1747 bp upstream