rs30764254 SNP Detail

Summary

• ID
  rs30764254
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54869361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCTTGTGT GTGGGCAAGG GGGGCAGAAT CTGAGCGATC
  GGAATTACGA GACAAAAACA GCCACAGAGT CACAGTGAGA ACAGAGGTCG GGGGCAGTTA
  W
  AAAACCCAAC CCCCCCGACA GCGGAGAGTC ACAGACAGGG ATCCCTGGAG AAACACACAG
  ACCAAGGAGT GGGAGGTAAG AGGGAGGGGG AAAGGAGGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39219130	mCV23591136	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss139566983	ENSMUSSNP103178	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss324638707	CHEV_14_55250741	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30764254					SNP	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54869361 () rs orientation: forward

Symbol	Name	Function Class
Cdh24	cadherin-like 24	within coordinates
Cpgi6468	CpG island 6468	165 bp proximal
Rr299444	regulatory region 299444	within coordinates
Tssr128611	transcription start site region 128611	380 bp downstream
Tssr128612	transcription start site region 128612	399 bp downstream