rs30766260 SNP Detail

Summary

• ID
  rs30766260
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151994521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATTTGAG TCTAGCCTGA
  TCTACAAAGT GAGTTCCAGG CCAGCCGGAG GAGCCAACAG GCTCTGTCTC AACAACAGTA
  AATCCAGAGT GTTTGGTGGA TCTTTCTAAT TACTAACAAA GGTTTCATTC ATAGTTAAAA
  TTTAAATATA CATTTTACTC TAAAACCTGC TAAACTCTTT CTTCATCTGG CAGGACACGC
  R
  GCACAAGCCT GTCTGTGTGA GGTGAGGGCA CAGCTGTTGG CACTGGTGCC GGCTCAGCTT
  GTCAGGCTTG GTGCCAAGGA CTTTGCCTGA TCAACTGTGC CACCGGCCCC TGTATTTAGT
  CTTCAGTTAA AGAAACCAGT AAGAACAAAA CTTGCTTAGA GACATATTTA CCTTCCGTGC
  TTTCACAATT AAAGCTGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45464502	mCV24027922	ABI	CRAMUS_MOUSE	f	SNP	G	G	G						A
ss51060138	NES13425262	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G	G	G	A	A	A		G	A	A	G		G
ss136101762	ENSMUSSNP6236560	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
ss321028594	CHEV_3_151951848	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30766260					SNP	G	G	G	A	G	G	G	G	A	A	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060138	NES13425262	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151994521 () rs orientation: forward

Symbol	Name	Function Class
Miga1	mitoguardin 1	within coordinates
Rr587515	regulatory region 587515	830 bp distal
Rr587516	regulatory region 587516	within coordinates
Tssr32405	transcription start site region 32405	1442 bp upstream