rs30767844 SNP Detail

Summary

• ID
  rs30767844
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135870826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGCTCCTA GATGGAGGCC AACACTACCC
  ATGTCCATAG TAAGACCCAC CAGAGAAGGC ACAAAAGGAC TCAGAGGGAT GCCCGGCTCC
  TGGGTTGCTC GGTGAGTTGG GCAGGACCTG CAATACTGCT AAGATGAGCA ATGGGGACCA
  S
  AGCCTTCATC ACTAAAAGTC AAACGCGGTT CCCAGCCGGA ATCTGAAAAC TCTCATCTCA
  GCCAAGCTGG GAACCTTTCC TTTCCTGGCA CCAGGAACAG CACAGTAGTA AATGGAGAGA
  GACTAGGCTA GACCTCCAGG AGCCATCTTT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44962331	mCV23000895	ABI	CRAMUS_MOUSE	f	SNP	G					G		C
ss49682759	NES12985400	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G		G	C	G		G	G	C	G		G
ss145549647	ENSMUSSNP1107708	ENSEMBL	ENSEMBL_Sanger	f	SNP	G							C
ss319994058	CHEV_1_137839665	CHEVERUD	SCREENING_POP	f	SNP										C					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30767844					SNP	G	G	G	G	G	G	G	C	G	C	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49682759	NES12985400	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135870826 () rs orientation: forward

Symbol	Name	Function Class
Gm71005	predicted gene, 71005	1075 bp downstream
Rr419320	regulatory region 419320	206 bp distal
Rr419321	regulatory region 419321	1571 bp proximal
Rr419322	regulatory region 419322	1883 bp proximal