rs30770087 SNP Detail

Summary

• ID
  rs30770087
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:185151218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAACTCT GTGCAGACAA
  AGCCTATCTA ATTCTGGCTT CATGTTTTTG ATATATTTTC ATTTACTGCA TAGCTTCATT
  ATTAGGTAAT ATAAACTCTT AGTTTTATTT TATAAACATT TAGCATTTTA CCTTTTTTTT
  TTTTTTTTAA TAGCTATGAT AGAGATTTTT ACCTTAGACT GGAAGTTAGG AGTCAAATAA
  R
  TATATACCAA CTTACATTAT AGGAGTAGTG TGGAACATGT CCTCACATGG TAGCTGAGAT
  CTTAAGGGTG GATGCTTCAT TTGTTGGGGT TTTTCACAAT CAACCATCTC ACATTACAAA
  GCCGCCAGTG TTTATCATCT TTCTTTAAAA TGGCTCCTAA GGTCACCCTG TGCTGGGGTT
  AGTCCCAGTG TTGACCCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44962267	mCV25392785	ABI	CRAMUS_MOUSE	f	SNP		G	A				A
ss46731538	NES10640206	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	A	A	A	G		G	G	A		A
ss320175595	CHEV_1_187242900	CHEVERUD	SCREENING_POP	f	SNP										G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30770087					SNP	G	G	A	G	G	A	A	A	G	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46731538	NES10640206	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185151218 () rs orientation: forward

Symbol	Name	Function Class
Eprs1	glutamyl-prolyl-tRNA synthetase 1	Intron
Rr425382	regulatory region 425382	799 bp distal
Rr425383	regulatory region 425383	1858 bp proximal
Tssr10610	transcription start site region 10610	727 bp downstream