rs30771318 SNP Detail

Summary

• ID
  rs30771318
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172347667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGC TTTTTGGATT AAGCAGCAGC
  R
  ATGGCAGCAG AATAATCGGT GGTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44962575	mCV24953504	ABI	CRAMUS_MOUSE	f	SNP	A	A					G	A
ss49751577	NES13027739	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A	A	A		G	A	A	A		A
ss120011758	PARCsnp_1.19957	PARC_SEQ	INBRED	f	SNP							G	A
ss120014640	PARCsnp_1.10009	PARC_SEQ	INBRED	f	SNP							G	A
ss146194218	ENSMUSSNP1084892	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss320125843	CHEV_1_174450231	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30771318					SNP	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751577	NES13027739	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172347667 () rs orientation: forward

Symbol	Name	Function Class
Cfap45	cilia and flagella associated protein 45	1030 bp upstream
Cpgi1054	CpG island 1054	863 bp proximal
Gm70635	predicted gene, 70635	1133 bp downstream
Rr372460	regulatory region 372460	within coordinates
Rr423607	regulatory region 423607	1874 bp distal
Rr423608	regulatory region 423608	454 bp proximal
Rr423609	regulatory region 423609	955 bp proximal
Tssr10237	transcription start site region 10237	1006 bp upstream