rs30771439 SNP Detail

Summary

• ID
  rs30771439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:109737893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTTTTTC CAACATCACA
  GAACCACTAA GCACAGCAGC ATCTCCATCT TTCCTATTTA GCACACCAGC AGTAAAACTT
  TACAAAGCAG ATGTAATTAA TTTCCACAGA GAACCATTTA CATTGAGAGT AATTTGGTCA
  GGAAATACCC TCAAAGCTGA AGTCTTTTAT AGAGACGGTA TCTTTATGGC GACTTTTTTT
  Y
  CACAACAGCT GTAGATCATG GCATTTTGAT AGCATTTTAA TTTTTTTTTG ATGTTGTGTT
  TCTTTGGAGT GCTCTTGTTT TAAGCAAGCT AATTAATCAC TCTTGAAGAA TAAATCCCTC
  TTATTACATT GGATTTCAGG TTTCTGACAT TAATTAAAGC AAGTCAGCAG GTTGAAGAAG
  TTCATGAGTT TTTCACGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47981829	NES12006969	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30771439					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47981829	NES12006969	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:109737893 () rs orientation: forward

Symbol	Name	Function Class
Nav3	neuron navigator 3	within coordinates
Rr224236	regulatory region 224236	1707 bp proximal
Tssr99236	transcription start site region 99236	1782 bp downstream
Tssr99237	transcription start site region 99237	1798 bp downstream
Tssr99238	transcription start site region 99238	1820 bp downstream
Tssr99239	transcription start site region 99239	1843 bp downstream
Tssr99240	transcription start site region 99240	1879 bp downstream
Tssr99241	transcription start site region 99241	1920 bp downstream
Tssr99242	transcription start site region 99242	1980 bp downstream