rs30771616 SNP Detail

Summary

• ID
  rs30771616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108638231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCCACATG TACCAAGTGT ACAAGTCCAG GCGGGGAATA
  AAACGGAGCG AAGACAGCAA GGTAGGTGCA TCCCTGGGAA CCTCATTCCT TAGCCCCTCG
  Y
  GTGCGCTGAG TTTCCAAGAA AAGTTTGCTT GTTTCAAGGT TGGCTGGGGG GTTCAAGATG
  AGATGAGCTC ATTGCCACAA ATGAGTGACT TGGGAAAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45963772	mCV24297487	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		C
ss51810827	NES14774567	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	C	T	C	T	T	C	T
ss133506679	ENSMUSSNP4055609	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30771616					SNP	T	T	T	T	T	T	T	T	C	C	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51810827	NES14774567	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108638231 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	336 bp upstream
4833447P13Rik	RIKEN cDNA 4833447P13 gene	1730 bp upstream
Bhlhe40	basic helix-loop-helix family, member e40	Intron
Cpgi17812	CpG island 17812	within coordinates
Gm17055	predicted gene 17055	1677 bp downstream
Rr399817	regulatory region 399817	312 bp upstream
Rr636155	regulatory region 636155	1333 bp distal
Rr636156	regulatory region 636156	386 bp distal
Rr636157	regulatory region 636157	525 bp distal
Rr636158	regulatory region 636158	within coordinates
Rr636159	regulatory region 636159	333 bp proximal
Tssr58071	transcription start site region 58071	1603 bp downstream
Tssr58072	transcription start site region 58072	824 bp downstream
Tssr58073	transcription start site region 58073	773 bp downstream
Tssr58074	transcription start site region 58074	736 bp downstream
Tssr58075	transcription start site region 58075	588 bp downstream
Tssr58076	transcription start site region 58076	483 bp downstream
Tssr58077	transcription start site region 58077	404 bp downstream
Tssr58078	transcription start site region 58078	477 bp upstream
Tssr58079	transcription start site region 58079	720 bp upstream
Tssr58080	transcription start site region 58080	1069 bp upstream
Tssr58081	transcription start site region 58081	1500 bp upstream
Tssr58082	transcription start site region 58082	1849 bp upstream
Tssr62390	transcription start site region 62390	1848 bp upstream
Tssr62391	transcription start site region 62391	1447 bp upstream