rs30771896 SNP Detail

Summary

• ID
  rs30771896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:119908994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTACTAGG TCAGACTTTT TCTCTGTTTA TAAGTAATGC
  TTGTTCTGGT GTAGTACTTA AGTGTATGTA TCTCAACTGA AATGAGATAA CAACACAGGG
  Y
  CTCTGTAAGC TGCTTCTGAC TATGCCTCTC AGGTATGTAG CTATCAAGGA AAATATGCCT
  CCAGCAGACA GCTTCTTCCC TCTAGGATAA GAAGGTACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46443787	mCV22556066	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss138915073	ENSMUSSNP2987033	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss324207697	CHEV_12_121183732	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30771896					SNP	C	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119908994 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5238	CpG island 5238	607 bp proximal
Rr474318	regulatory region 474318	211 bp proximal
Tmem196	transmembrane protein 196	563 bp upstream
Tssr115576	transcription start site region 115576	845 bp upstream