rs30773085 SNP Detail

Summary

• ID
  rs30773085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:109739289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATACCC CCCTATTCAG
  TCTCCTAAGC ACATGGACAG GAGAGGAGAA CACACTTGCT CTCAGCCAAC AATTCTATGT
  GGACAATTCA AGCAAAGGAA AAAAAAAAAA AAAAAAAAAA AGGAAGTCGT TGCTGGTTTT
  CCTTCCAGTC TGTGCCAAAT GACTCCTGAC ATGAGACCTT TCACAATTAT CCCTGCTGGA
  Y
  CAAGACCCAG TTTCAAGGAG TCTCAGTGAA TGAGTTACTC TGGTTAACAA AATGCACACA
  CATGGGAGGC ACATGGTTTA ACGAACCTTT CATTTCTGAC AATGCTATAT GTGTAAAGAA
  CACTGTTCCA ACTATTTCAA AGTACGGCCA GAATATCCCT TTCAGTCTCT CATAAACGCA
  TTTCATTACA ATGGAGATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47981845	NES12006982	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		C	C		T
ss323458399	CHEV_10_109340484	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30773085					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47981845	NES12006982	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:109739289 () rs orientation: forward

Symbol	Name	Function Class
Nav3	neuron navigator 3	within coordinates
Rr212647	regulatory region 212647	1512 bp proximal
Rr224236	regulatory region 224236	311 bp proximal
Tssr99236	transcription start site region 99236	386 bp downstream
Tssr99237	transcription start site region 99237	402 bp downstream
Tssr99238	transcription start site region 99238	424 bp downstream
Tssr99239	transcription start site region 99239	447 bp downstream
Tssr99240	transcription start site region 99240	483 bp downstream
Tssr99241	transcription start site region 99241	524 bp downstream
Tssr99242	transcription start site region 99242	584 bp downstream