rs30773090 SNP Detail

Summary

• ID
  rs30773090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:109739791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGCAGG TCTCACCAAT
  GATCTGGATG ATGTCTGCCA GAAGGACCCC GTCCGCAATG TCCTGCTGCA AGTCCTTGAT
  CAGCCGCTTG TGGCCGGATT TTGCCAGGTA GTGGTTGGCC CAGTCAGTGT AAATCTGTTG
  GGAGACAGGG AGAGAAGAAG TGAGAAGGGC GTGGGGGAAG GAGAGACAAG AAAACCCCGC
  R
  AGGCAAATGT GAGGCTCAAA GGGAAACTGT TCTGGATCGC ATTCCAGCTA AAGAAGTCAT
  AGCTCCGAAG GAAACAGTTG TAAAGTCATT TTTAAACGGC TCTTTCCCCC ACTTATCTCC
  TGTTTCAAAG GAGGATGAAT CACTCCTTTC AAAATCATGG ACTAGTCACT TGTGACCAAG
  CAAAACTCCC TTCCCAGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47981851	NES12006988	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	G	A		A
ss323458402	CHEV_10_109340986	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30773090					SNP	G	G	G	G	G	G	A	G	G	G	G	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47981851	NES12006988	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:109739791 () rs orientation: forward

Symbol	Name	Function Class
Nav3	neuron navigator 3	within coordinates
Rr212647	regulatory region 212647	1010 bp proximal
Rr224236	regulatory region 224236	within coordinates
Rr225672	regulatory region 225672	1811 bp proximal
Tssr99236	transcription start site region 99236	101 bp upstream
Tssr99237	transcription start site region 99237	85 bp upstream
Tssr99238	transcription start site region 99238	59 bp upstream
Tssr99239	transcription start site region 99239	30 bp upstream
Tssr99240	transcription start site region 99240	3 bp upstream
Tssr99241	transcription start site region 99241	22 bp downstream
Tssr99242	transcription start site region 99242	82 bp downstream