rs30773774 SNP Detail

Summary

• ID
  rs30773774
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:109740014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACTGTTC TGGATCGCAT
  TCCAGCTAAA GAAGTCATAG CTCCGAAGGA AACAGTTGTA AAGTCATTTT TAAACGGCTC
  TTTCCCCCAC TTATCTCCTG TTTCAAAGGA GGATGAATCA CTCCTTTCAA AATCATGGAC
  TAGTCACTTG TGACCAAGCA AAACTCCCTT CCCAGATGGC TCCAGAGGAG ATCGCTACCG
  R
  GAAAGAGTTT GAGTTTCTCT CTTTTATTTT TTTCTCCCTT TCCTCCATTA TTTTGAAAAT
  AATCCTGTCT GTGTAAAAGG AAGTCACCTG GACCGACTTA TAGAGGAACT TTCTAACAAA
  ATGTGTTTCT CCGAAGGGGC TTTATTGAAT TTGTCACCCT AGATACTCTA ATGTGACAAT
  GTTTTGGCGT GGTTTTCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47981855	NES12006990	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30773774					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47981855	NES12006990	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:109740014 () rs orientation: forward

Symbol	Name	Function Class
Nav3	neuron navigator 3	within coordinates
Rr212647	regulatory region 212647	787 bp proximal
Rr224236	regulatory region 224236	213 bp distal
Rr225672	regulatory region 225672	1588 bp proximal
Tssr99236	transcription start site region 99236	324 bp upstream
Tssr99237	transcription start site region 99237	308 bp upstream
Tssr99238	transcription start site region 99238	282 bp upstream
Tssr99239	transcription start site region 99239	253 bp upstream
Tssr99240	transcription start site region 99240	226 bp upstream
Tssr99241	transcription start site region 99241	187 bp upstream
Tssr99242	transcription start site region 99242	131 bp upstream