rs30773779 SNP Detail

Summary

• ID
  rs30773779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:109740253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCTCCAT TATTTTGAAA
  ATAATCCTGT CTGTGTAAAA GGAAGTCACC TGGACCGACT TATAGAGGAA CTTTCTAACA
  AAATGTGTTT CTCCGAAGGG GCTTTATTGA ATTTGTCACC CTAGATACTC TAATGTGACA
  ATGTTTTGGC GTGGTTTTCT GAAATAATTG CAAATTCCTT CCTGTCTAAG ATATATTGTT
  Y
  GGACTGTCAT CTCTCATTTA AGCCTCTTGA AATGTGTGTG CATTAGGACA AAGAGGCAGC
  ATGTGGAGTT ATAATGGAGC AATTGAAATG CAGAATCGGG AAGTGTATTG CCAGCCACAG
  GGTTGGCATC TGACTTACAG AAGAGGGTGA CTCTAGGAAC TGGTCACGAT ATAAAGAAAA
  GCTGAAATTT CAAGAATATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47981861	NES12006993	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T	C		C
ss323458408	CHEV_10_109341448	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30773779					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47981861	NES12006993	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:109740253 () rs orientation: forward

Symbol	Name	Function Class
Nav3	neuron navigator 3	within coordinates
Rr212647	regulatory region 212647	548 bp proximal
Rr224236	regulatory region 224236	452 bp distal
Rr225672	regulatory region 225672	1349 bp proximal
Tssr99236	transcription start site region 99236	563 bp upstream
Tssr99237	transcription start site region 99237	547 bp upstream
Tssr99238	transcription start site region 99238	521 bp upstream
Tssr99239	transcription start site region 99239	492 bp upstream
Tssr99240	transcription start site region 99240	465 bp upstream
Tssr99241	transcription start site region 99241	426 bp upstream
Tssr99242	transcription start site region 99242	370 bp upstream