rs30773782 SNP Detail

Summary

• ID
  rs30773782
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:109740330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAATGTG TTTCTCCGAA
  GGGGCTTTAT TGAATTTGTC ACCCTAGATA CTCTAATGTG ACAATGTTTT GGCGTGGTTT
  TCTGAAATAA TTGCAAATTC CTTCCTGTCT AAGATATATT GTTTGGACTG TCATCTCTCA
  TTTAAGCCTC TTGAAATGTG TGTGCATTAG GACAAAGAGG CAGCATGTGG AGTTATAATG
  S
  AGCAATTGAA ATGCAGAATC GGGAAGTGTA TTGCCAGCCA CAGGGTTGGC ATCTGACTTA
  CAGAAGAGGG TGACTCTAGG AACTGGTCAC GATATAAAGA AAAGCTGAAA TTTCAAGAAT
  ATCGCACACA CAAAAAGAAA TGTTACTATT TTTAAAAATC CTTCAGTCTA GTAACCATAA
  AAGTCAGAAA TCGGCTTAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47981865	NES12006995	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G		C	G	G	C		C
ss323458410	CHEV_10_109341525	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30773782					SNP	G	G	G	G	G	G	C	G	G	G	G	C	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47981865	NES12006995	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:109740330 () rs orientation: forward

Symbol	Name	Function Class
Nav3	neuron navigator 3	within coordinates
Rr212647	regulatory region 212647	471 bp proximal
Rr224236	regulatory region 224236	529 bp distal
Rr225672	regulatory region 225672	1272 bp proximal
Tssr99236	transcription start site region 99236	640 bp upstream
Tssr99237	transcription start site region 99237	624 bp upstream
Tssr99238	transcription start site region 99238	598 bp upstream
Tssr99239	transcription start site region 99239	569 bp upstream
Tssr99240	transcription start site region 99240	542 bp upstream
Tssr99241	transcription start site region 99241	503 bp upstream
Tssr99242	transcription start site region 99242	447 bp upstream