rs30773783 SNP Detail

Summary

• ID
  rs30773783
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:109740350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCTTTAT TGAATTTGTC
  ACCCTAGATA CTCTAATGTG ACAATGTTTT GGCGTGGTTT TCTGAAATAA TTGCAAATTC
  CTTCCTGTCT AAGATATATT GTTTGGACTG TCATCTCTCA TTTAAGCCTC TTGAAATGTG
  TGTGCATTAG GACAAAGAGG CAGCATGTGG AGTTATAATG GAGCAATTGA AATGCAGAAT
  Y
  GGGAAGTGTA TTGCCAGCCA CAGGGTTGGC ATCTGACTTA CAGAAGAGGG TGACTCTAGG
  AACTGGTCAC GATATAAAGA AAAGCTGAAA TTTCAAGAAT ATCGCACACA CAAAAAGAAA
  TGTTACTATT TTTAAAAATC CTTCAGTCTA GTAACCATAA AAGTCAGAAA TCGGCTTAAA
  GATGTTAAGG TATCATGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47981867	NES12006996	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30773783					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47981867	NES12006996	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:109740350 () rs orientation: forward

Symbol	Name	Function Class
Nav3	neuron navigator 3	within coordinates
Rr212647	regulatory region 212647	451 bp proximal
Rr224236	regulatory region 224236	549 bp distal
Rr225672	regulatory region 225672	1252 bp proximal
Tssr99236	transcription start site region 99236	660 bp upstream
Tssr99237	transcription start site region 99237	644 bp upstream
Tssr99238	transcription start site region 99238	618 bp upstream
Tssr99239	transcription start site region 99239	589 bp upstream
Tssr99240	transcription start site region 99240	562 bp upstream
Tssr99241	transcription start site region 99241	523 bp upstream
Tssr99242	transcription start site region 99242	467 bp upstream