rs30774587 SNP Detail

Summary

• ID
  rs30774587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:109740554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGTATTG CCAGCCACAG
  GGTTGGCATC TGACTTACAG AAGAGGGTGA CTCTAGGAAC TGGTCACGAT ATAAAGAAAA
  GCTGAAATTT CAAGAATATC GCACACACAA AAAGAAATGT TACTATTTTT AAAAATCCTT
  CAGTCTAGTA ACCATAAAAG TCAGAAATCG GCTTAAAGAT GTTAAGGTAT CATGGGTGGT
  Y
  CATTTGTAAC TTTGTCACAA GGTAGATGGA AGTAGGACAT AATATTAAAA TTGAAATGAA
  ACTAGAGAAG CAGCCTAGAA ATGTTGAATC TAAGGAGAAA CTGTGGCCAA TGTACGGTGC
  CTAAAATTAG CCCAGCTTAA GCTGAAGAGC TCTGAATTTT ATCTCAGAGT CATGAGCACT
  AAATGCCAAG ACAGTGCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47981871	NES12006998	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30774587					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47981871	NES12006998	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:109740554 () rs orientation: forward

Symbol	Name	Function Class
Nav3	neuron navigator 3	within coordinates
Rr212647	regulatory region 212647	247 bp proximal
Rr224236	regulatory region 224236	753 bp distal
Rr225672	regulatory region 225672	1048 bp proximal
Tssr99236	transcription start site region 99236	864 bp upstream
Tssr99237	transcription start site region 99237	848 bp upstream
Tssr99238	transcription start site region 99238	822 bp upstream
Tssr99239	transcription start site region 99239	793 bp upstream
Tssr99240	transcription start site region 99240	766 bp upstream
Tssr99241	transcription start site region 99241	727 bp upstream
Tssr99242	transcription start site region 99242	671 bp upstream