rs30776553 SNP Detail

Summary

• ID
  rs30776553
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3027403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CGTCCTACAG AGGACATTTC TAAATTTTCC ATCTTTTTCA GTTTTCCTCG CCATATTTCA
  TGTCCTAAAG TTTGTATTTC TCATCTTCCC TGATTTTCAG TTTTCTAGCC ATATTCCTGG
  TCCTACAGTG TGCATTTCTC ATTTTTCACG TTTTTCAGTG ATTTCATCAT TTTTCAAGTC
  AAGTGGATAT TTCTCATTTT CCATGATTTT CAGTTCTCTT GCCATATTCC ATGTCCTACA
  GTGGATATTT CTAAATTTTC CACCTTTTTC AGTTTTCCTC GTCATATTTC AAGTCCTAAA
  K
  TGCGTATTTC TCATCTTCCC TGATTTTCAG TTTTCTCGCC ATATTCCTGG TCCTACAGTG
  TGCATTTCTC ATTTTTCACG TTTTTCAGTG ATTTCGTCAT TTTTCAAGTC GTCAAGTGGA
  TCTTTCTCAT TTTCCATGAT TTTCAGTTTT CTTGCCATAT TCCATGTCCT ACAGTGGACA
  TTTCTAAATT TTCCACCTTT TTCAGTTTTC CTCGCCATAT TTCACGTCCT AAAGTGTATT
  TCTCATTTTC CGTGATTTTC AGTTTTCTCG CCATATTCCA GGTCCTACAG TGTGCATTTG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46444808	mCV24782914	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30776553					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3027403 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21323	CpG island 21323	1495 bp distal
Cpgi21324	CpG island 21324	223 bp distal
Cpgi21325	CpG island 21325	1984 bp proximal
Rr673606	regulatory region 673606	873 bp distal
Rr673607	regulatory region 673607	393 bp distal
Rr673608	regulatory region 673608	within coordinates
Rr673609	regulatory region 673609	478 bp proximal
Rr673610	regulatory region 673610	1478 bp proximal
Tssr83578	transcription start site region 83578	1913 bp downstream
Tssr83579	transcription start site region 83579	1871 bp downstream
Tssr83580	transcription start site region 83580	1775 bp downstream
Tssr83581	transcription start site region 83581	1530 bp downstream
Tssr83582	transcription start site region 83582	908 bp downstream
Tssr83583	transcription start site region 83583	721 bp downstream
Tssr83584	transcription start site region 83584	634 bp downstream
Tssr83585	transcription start site region 83585	258 bp downstream
Tssr83586	transcription start site region 83586	36 bp upstream
Tssr83587	transcription start site region 83587	352 bp upstream
Tssr83588	transcription start site region 83588	1968 bp upstream
Tssr88018	transcription start site region 88018	1845 bp upstream
Tssr88019	transcription start site region 88019	683 bp upstream
Tssr88020	transcription start site region 88020	615 bp upstream
Tssr88021	transcription start site region 88021	within coordinates
Tssr88022	transcription start site region 88022	72 bp downstream
Tssr88023	transcription start site region 88023	1999 bp downstream