rs30779237 SNP Detail

Summary

• ID
  rs30779237
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3038053 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  AAAATTGAGA AATGTCCACT GTAAGGCATG GAATATGGCA AGAAACCTGA AAATTATGGA
  AAATGAGAAA CATCCAGTTG GCGACTTGAA AAATGACGAA ATCACTGAAA AAAGTGAAAA
  ATGAAAAATG TACATTGTAG GACCTGGAGT ATGGCGAGAA AACTGAAAAT CACGGAAAAT
  GAAAAATACA CAATTTAGGA CATGAAATGT GGCGAGGAAA ACTGAAAAAG GTGGAAAAAT
  TTGAAACGTC CACTGTGGGA CATGGAATAT GGCAAGAAAA CTGAAAATCA TGGAAAATGG
  R
  AAATAACCAC TTGAAGACTT GAAAAATGAG GAAATCACTG AAAAACGTGA AAAATGTGAA
  ATGCACACTT TAGGACCTGG AATATGGCGA GAAAACTGAA AATCACGGAA AATGAGAAAA
  ACACACTTAG GACGTGAAAT ATGGCGAGGA AAACTGAATA AGGTGGATAA TTTAGAATAG
  CCCGCTGTGG GACATGGAAT ATGGCAAGAA AACTTAAAAT CATGGAAAAT GAGAAACATC
  CACTTGACAA CTTGAAAGTT GACGAAATCA CTGAAAAACG TGAAAAATGA GAAATGCACA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46444530	mCV23589111	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30779237					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3038053 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi21328	CpG island 21328	1464 bp distal
Cpgi21329	CpG island 21329	within coordinates
Mir101c	microRNA 101c	616 bp downstream
Rr673616	regulatory region 673616	803 bp distal
Rr673617	regulatory region 673617	143 bp distal
Rr673618	regulatory region 673618	248 bp proximal
Tssr83600	transcription start site region 83600	1955 bp downstream
Tssr83601	transcription start site region 83601	1710 bp downstream
Tssr83602	transcription start site region 83602	1666 bp downstream
Tssr83603	transcription start site region 83603	1652 bp downstream
Tssr83604	transcription start site region 83604	698 bp downstream
Tssr83605	transcription start site region 83605	19 bp downstream
Tssr83606	transcription start site region 83606	129 bp upstream
Tssr88026	transcription start site region 88026	1925 bp upstream
Tssr88027	transcription start site region 88027	1680 bp upstream
Tssr88028	transcription start site region 88028	1656 bp upstream
Tssr88029	transcription start site region 88029	within coordinates
Tssr88030	transcription start site region 88030	130 bp downstream