rs30780566 SNP Detail

Summary

• ID
  rs30780566
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:117536395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTAAACAC GGAGGTGTGT GTGTGTGTGG GGGGGGGGGG
  GGGATAATCT GTAAGTTCTC TTTACCTCGC CTTTGTAACT TGTTACTTCT GATCAACATT
  R
  AACCCTAACA GGAAGCAGTT TCTACAGGAA CGTTTAGAAA AGTCATTTTA AGTTTAAGTG
  TCAGTACTTC AGTGAGATCC ACAGAGAGCT CTGTGGCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46444659	mCV24240476	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss138890305	ENSMUSSNP5672805	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			A
ss324202206	CHEV_12_118811248	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30780566					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:117536395 () rs orientation: forward

Symbol	Name	Function Class
Gm54711	predicted gene, 54711	1567 bp upstream
Rapgef5	Rap guanine nucleotide exchange factor (GEF) 5	within coordinates