rs30782671 SNP Detail

Summary

• ID
  rs30782671
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3038089 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  GGACGTGAAA TATGGCGAGG AAAACTGAAA ACGGTGGATT ATTCAGAAAT GTCCACTGTA
  ATACGTGAAA TATGGCAAGA AAAGTGAAAA TCATGGAAAA TGAGAAACAT CCACTTGACA
  ACTTGAAAAA TGACGAAATC ACTAAAAAAC GTGAAAATGT GAAATGCACA CTGAAGGACC
  TGGAATATGG CGAGAAAACT GAAAATCACG GAAAATGAGA AATACACACT TTAGGACGTG
  AAATATGGCG AGGAAAACTG AAAACGGTGG AAAATTTAGA AATGTCCACT GTAGGACGTG
  R
  AATATGGCAA GAAAACTGAA AATCATGGAA AATGAGAAAC ATCCACTTGA CGACTTGAAA
  AATGACGAAA TCACTAAAAA ACGTGAAAAG TGAGAAATGC ACACTGAAGG ACCTGGAATA
  TGGTGAGAAA ACTGAAAATC ACGGAAAATG AGAAATACAC ACTTTAGGAC GTGAAATATG
  GCGAGGAAAA CTGAAAAAGG TGGAATATTT AGAAATTTCC ACTGTAGGAC GTTGAATATG
  GCAAGAAAAC TGAAATTCAT GGGAAAATGA GAAACATCCA CTTGACTACT TGAAAAATGA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss46445441	mCV25359234	ABI	CRAMUS_MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs30782671					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3038089 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi21328	CpG island 21328	1500 bp distal
Cpgi21329	CpG island 21329	within coordinates
Mir101c	microRNA 101c	580 bp downstream
Tssr83600	transcription start site region 83600	1991 bp downstream
Tssr83601	transcription start site region 83601	1746 bp downstream
Tssr83602	transcription start site region 83602	1702 bp downstream
Tssr83603	transcription start site region 83603	1688 bp downstream
Tssr83604	transcription start site region 83604	734 bp downstream
Tssr83605	transcription start site region 83605	55 bp downstream
Tssr83606	transcription start site region 83606	93 bp upstream
Tssr88026	transcription start site region 88026	1961 bp upstream
Tssr88027	transcription start site region 88027	1716 bp upstream
Tssr88028	transcription start site region 88028	1692 bp upstream
Tssr88029	transcription start site region 88029	19 bp upstream
Tssr88030	transcription start site region 88030	94 bp downstream