rs30785017 SNP Detail

Summary

• ID
  rs30785017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:26838790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTTGGGG TGTCCAAGCC
  TCCCAAATGC CGGCATTCCA AGCATGAACC ACTGATCCCC ACATTGAGAG TAGTAGTGCT
  GAAATCCTTT GAAGGCAGGG AACTTACAAC CTTCTAATAC AGCTGGCTCC ACTGTGGGGA
  TGAGGAACCA GAACTCTGTG CCCCTCTGAG GATAAGATGT GGCCTCCAGA CCTCTGCTGC
  Y
  CTTGTTCTTC CTGTCTGTTT CACTTCCTGA TTGGCCTGCC TTCCATCCAT ACCCATCCAA
  GACAGCGTTC TGCACTTCTT GTTATCCCTG AAGTCCCTGT CCCCAGCCAG AAGTCAGGGT
  GCCACTGAGT CCTGTGTGAG CATCGGAGAA AGCAAAGCTC AGGAGGTTGA GCAAGAGGAT
  CAGAAGTTCA AGGCCAGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss49170857	NES12493450	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs30785017					SNP	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49170857	NES12493450	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:26838790 () rs orientation: forward

Symbol	Name	Function Class
Arhgef3	Rho guanine nucleotide exchange factor 3	within coordinates
Cpgi6253	CpG island 6253	1374 bp distal
Rr296929	regulatory region 296929	389 bp distal
Tssr124726	transcription start site region 124726	1939 bp downstream
Tssr124727	transcription start site region 124727	1924 bp downstream
Tssr124728	transcription start site region 124728	1632 bp downstream