rs30785020 SNP Detail

Summary

• ID
  rs30785020
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:26838314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGACATC AGTGTCTCTT
  TCCGGGTCCG GGAGTCTGCT CTGGTCTGGC TCGAAGCCAT CCTTTCATCT AGAGCAGAGT
  GAAGGTACTC TGCATCGTTG GTGTCTTTCT GGGCTGCACC TGTTCAGTCT CTTTCTTGAA
  CTCCGAAAAC AGGAGTGCTG AACTCCTGGG AATCCTCTGG AAAATGACAC TGCAAGAAGC
  S
  TGTGTGCCAC AGAAGTGGAG TCTGAATCAC CTGTGGGTAA TAAAGGGTCC TCACCCCTCT
  CGGGACAAAC CCACACTTAG GGGGAGTGGA GATGGTGCAT GTGTGCTGTT TTCTCTGTTT
  GCTCAAAGCA CACATTTCAT AGAAGATTCA TGTCTACTAG AACATGAGAA ACCCAGGCCA
  AGTGACTATC TAGGCAAGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ
ss49170860	NES12493513	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ
rs30785020					SNP	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49170860	NES12493513	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:26838314 () rs orientation: forward

Symbol	Name	Function Class
Arhgef3	Rho guanine nucleotide exchange factor 3	within coordinates
Cpgi6253	CpG island 6253	898 bp distal
Rr296929	regulatory region 296929	within coordinates
Tssr124726	transcription start site region 124726	1463 bp downstream
Tssr124727	transcription start site region 124727	1448 bp downstream
Tssr124728	transcription start site region 124728	1156 bp downstream