rs30785022 SNP Detail

Summary

• ID
  rs30785022
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:26838115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTTGGCT TTGTAAGAAT
  GTCTCCTGTA GTTAACCAGC TTGTGCAGAG TGTATCCGAG AATGTGGGGT TAGACATAAC
  CTTTGCCAAG AATACTGCTG GGAATGAGGT CTTGGATGCT CTGGAAACTT GTATGTGCCT
  TTGGGAGTCA GAATGGATGA GATTTCTCTG GAATCCCTCC TAGCATTGGG GCCACAATCA
  R
  CTGACATCAG TGTCTCTTTC CGGGTCCGGG AGTCTGCTCT GGTCTGGCTC GAAGCCATCC
  TTTCATCTAG AGCAGAGTGA AGGTACTCTG CATCGTTGGT GTCTTTCTGG GCTGCACCTG
  TTCAGTCTCT TTCTTGAACT CCGAAAACAG GAGTGCTGAA CTCCTGGGAA TCCTCTGGAA
  AATGACACTG CAAGAAGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss49170862	NES12493509	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs30785022					SNP	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49170862	NES12493509	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:26838115 () rs orientation: forward

Symbol	Name	Function Class
Arhgef3	Rho guanine nucleotide exchange factor 3	within coordinates
Cpgi6253	CpG island 6253	699 bp distal
Rr296929	regulatory region 296929	within coordinates
Tssr124726	transcription start site region 124726	1264 bp downstream
Tssr124727	transcription start site region 124727	1249 bp downstream
Tssr124728	transcription start site region 124728	957 bp downstream