rs30785023 SNP Detail

Summary

• ID
  rs30785023
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:26838021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGTAAGG TGATATGCAA
  GTCCATGTTT CTTCCTCTTC TGCTTGGGAT CTGACCTTAC CTATCCAGCA CCAGGATGCT
  CTGTTCAGAT TAGGAAACTT GGCTTTGTAA GAATGTCTCC TGTAGTTAAC CAGCTTGTGC
  AGAGTGTATC CGAGAATGTG GGGTTAGACA TAACCTTTGC CAAGAATACT GCTGGGAATG
  W
  GGTCTTGGAT GCTCTGGAAA CTTGTATGTG CCTTTGGGAG TCAGAATGGA TGAGATTTCT
  CTGGAATCCC TCCTAGCATT GGGGCCACAA TCAGCTGACA TCAGTGTCTC TTTCCGGGTC
  CGGGAGTCTG CTCTGGTCTG GCTCGAAGCC ATCCTTTCAT CTAGAGCAGA GTGAAGGTAC
  TCTGCATCGT TGGTGTCTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss49170863	NES12493507	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs30785023					SNP	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49170863	NES12493507	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:26838021 () rs orientation: forward

Symbol	Name	Function Class
Arhgef3	Rho guanine nucleotide exchange factor 3	within coordinates
Cpgi6253	CpG island 6253	605 bp distal
Rr296929	regulatory region 296929	within coordinates
Tssr124726	transcription start site region 124726	1170 bp downstream
Tssr124727	transcription start site region 124727	1155 bp downstream
Tssr124728	transcription start site region 124728	863 bp downstream