rs30785461 SNP Detail

Summary

• ID
  rs30785461
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87754780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACT CCTTATTCCT ATCCCTGGGA
  K
  TCCCACCCGC TACCTCCCTG GTACA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45464604	mCV23485223	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	T
ss135468486	ENSMUSSNP4751012	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30785461					SNP	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87754780 () rs orientation: forward

Symbol	Name	Function Class
Rr367451	regulatory region 367451	323 bp downstream
Rr579559	regulatory region 579559	458 bp distal
Rr579560	regulatory region 579560	1883 bp proximal
Sh2d2a	SH2 domain containing 2A	within coordinates
Tssr29833	transcription start site region 29833	701 bp downstream
Tssr29834	transcription start site region 29834	685 bp downstream
Tssr29835	transcription start site region 29835	619 bp downstream
Tssr29836	transcription start site region 29836	580 bp downstream
Tssr29837	transcription start site region 29837	474 bp downstream
Tssr29838	transcription start site region 29838	406 bp downstream
Tssr29839	transcription start site region 29839	326 bp downstream
Tssr33958	transcription start site region 33958	872 bp upstream
Tssr33959	transcription start site region 33959	672 bp upstream
Tssr33960	transcription start site region 33960	568 bp upstream
Tssr33961	transcription start site region 33961	1632 bp downstream