rs30788724 SNP Detail

Summary

• ID
  rs30788724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:23121070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCA GTGGCTCACA TGGACACCCA
  Y
  GGCCACCTTG AGCAAAGGCA TTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44963520	mCV24752561	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss146216184	ENSMUSSNP5415724	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss325768039	CHEV_19_23218196	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30788724					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23121070 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10683	CpG island 10683			1067 bp distal
Klf9	Kruppel-like transcription factor 9			Intron
				Noncoding-Transcript-Variant
Tssr158623	transcription start site region 158623			1630 bp upstream
Tssr158624	transcription start site region 158624			1286 bp upstream