rs30789204 SNP Detail

Summary

• ID
  rs30789204
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172197717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATC TGGGTTCGCT GGAGAGACCC
  K
  GAAGCACCCA CCCTCAACTT CCCCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss44963279	mCV24593858	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss120009857	PARCsnp_1.19007	PARC_SEQ	INBRED	f	SNP		T	G
ss120013145	PARCsnp_1.08840	PARC_SEQ	INBRED	f	SNP		T	G
ss146189530	ENSMUSSNP6912871	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss320124589	CHEV_1_174300281	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30789204					SNP	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172197717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	694 bp distal
Cpgi1046	CpG island 1046	181 bp distal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Rr423550	regulatory region 423550	1161 bp distal
Tssr10190	transcription start site region 10190	323 bp upstream
Tssr10191	transcription start site region 10191	534 bp upstream
Tssr10192	transcription start site region 10192	714 bp upstream