rs30789235 SNP Detail

Summary

• ID
  rs30789235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10664722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGC TAGAGGTAGG GGAGAGTGTG
  Y
  GTGTGCAGGG CCTGGGTTGT GTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss44963580	mCV24892390	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss146044651	ENSMUSSNP5589751	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs30789235					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10664722 () rs orientation: forward

Symbol	Name	Function Class
2210404E10Rik	RIKEN cDNA 2210404E10 gene	1800 bp downstream
Cpgi10618	CpG island 10618	1036 bp proximal
Tssr155086	transcription start site region 155086	1366 bp upstream
Tssr155087	transcription start site region 155087	1386 bp upstream
Tssr155088	transcription start site region 155088	1560 bp upstream
Tssr155089	transcription start site region 155089	1870 bp upstream
Tssr155090	transcription start site region 155090	1898 bp upstream
Vps37c	vacuolar protein sorting 37C	1377 bp upstream