rs30790462 SNP Detail

Summary

• ID
  rs30790462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:125998116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCAAAGTT TTCACAAGGT CCAAGGTTGA
  CCCATTGCGT ACTGTGGATA AGTATTagag ttgcagagat acaagagaaa gaacatttcc
  tttgaagtta gactcaagtt caaacaagcc gaggctgcct tggctgtgtg accttATTTA
  Y
  ATCCACATAT TAAATGAACA GACATTTCCT TATTGTACTG TTTAAGGTTA GTAGAGCCAT
  GGAAAATAAG ACACATGATG TGTATGCTGA CCCCCAGCAG TACCTGGCCC ATAAACAGTC
  ACTATTGTTG TAGAGCACCT TGTACATTTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49671539	NES13001063	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		C	C	C	C		T
ss319959155	CHEV_1_127966956	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30790462					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49671539	NES13001063	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:125998116 () rs orientation: forward

Symbol	Name	Function Class
Gm35562	predicted gene, 35562	within coordinates
Gm37936	predicted gene, 37936	within coordinates
Nckap5	NCK-associated protein 5	within coordinates